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D-I-TASSER Outperforms AlphaFold? A New Frontier in Protein Structure Modeling

D-I-TASSER Outperforms AlphaFold? A New Frontier in Protein Structure Modeling

Deotima Chakraborty - May 29, 2025

Unlocking Biomolecular Secrets with AF3Score: A Leap Forward in Structural Evaluation

Unlocking Biomolecular Secrets with AF3Score: A Leap Forward in Structural Evaluation

Overlapping Genes, Unfolding Insights: Synthetic Biology Meets AI

Overlapping Genes, Unfolding Insights: Synthetic Biology Meets AI

PhysDock: A New Era in Protein-Ligand Docking with AI and Physics

PhysDock: A New Era in Protein-Ligand Docking with AI and Physics

Advancing Enzyme Design: RFdiffusion2 Enables Atomic-Level Scaffold Generation

Advancing Enzyme Design: RFdiffusion2 Enables Atomic-Level Scaffold Generation

Meet OpenFold: Reimplementing AlphaFold2 to Illuminate Its Learning Mechanisms and Generalization

Meet OpenFold: Reimplementing AlphaFold2 to Illuminate Its Learning Mechanisms and Generalization

Neegar Naushaba Iqbal - August 21, 2023 0

MELISSA: Revolutionizing Protein Function Prediction through Semi-Supervised Embedding

Tuft’s Researchers Unveil MELISSA: Revolutionizing Protein Function Prediction Through Semi-Supervised Embedding

Neegar Naushaba Iqbal - August 20, 2023 1

Astrocyte-Powered Transformers: A Biological Blueprint for High-Performance Neural Architectures

Astrocyte-Powered Transformers: A Biological Blueprint for High-Performance Neural Architectures

Aditi Sarkar - August 19, 2023 0

CHOP Researchers Unveil TEQUILA-seq: A Versatile and Affordable Tool for Targeted Long-Read RNA Sequencing

CHOP Researchers Unveil TEQUILA-seq: A Versatile and Affordable Tool for Targeted Long-Read...

Aditi Sarkar - August 17, 2023 0

Functional Unknomics: Exploring the Untapped Potential of Unknown Genes Leveraging Unknome Database

Functional Unknomics: Exploring the Untapped Potential of Unknown Genes Leveraging Unknome...

Aditi Sarkar - August 16, 2023 0

Empowering Medical Research with Drugst.One: A Seamless Plug-and-Play Solution for Online Systems Medicine and Network-Based Drug Repurposing

Empowering Medical Research with Drugst.One: A Seamless Plug-and-Play Approach for Online...

Neegar Naushaba Iqbal - August 15, 2023 0

GeneGPT Bridges the Gap Between Large Language Models and Biomedical Information

Answering Genomics Questions with Precision: GeneGPT Bridges the Gap Between LLMs...

Aditi Sarkar - August 14, 2023 0

Artificial Intelligence: The New Weapon in the Fight Against Infectious Diseases

Artificial Intelligence: The New Weapon in the Fight Against Infectious Diseases

Dr. Tamanna Anwar - August 12, 2023 0

Advancing Spatial Transcriptomic Cell-Type Deconvolution with SONAR: A Spatially Weighted Poisson-Gamma Model

Advancing Spatial Transcriptomic Cell-Type Deconvolution with SONAR: A Spatially Weighted Poisson-Gamma...

Aditi Sarkar - August 12, 2023 0

Exploring Deep Learning Methods for Binding Affinity Prediction Across Proteins and Ligands

Exploring Deep Learning Methods for Binding Affinity Prediction Across Proteins and...

Neegar Naushaba Iqbal - August 9, 2023 0

Ameliorating the Chromatin Landscape: ChromaFold's Accurate 3D Contact Map Prediction from scATAC-seq Data

Ameliorating the Chromatin Landscape: ChromaFold’s Accurate 3D Contact Map Prediction from...

Aditi Sarkar - August 6, 2023 0

Brock Researchers Develop AI-Powered Tool "DAPTEV" to Design New Aptamer Drugs for COVID-19

Brock Researchers Develop AI-Powered Tool ‘DAPTEV’ to Design New Aptamer Drugs...

Neegar Naushaba Iqbal - August 5, 2023 0

Large Language Models and Foundation Models in Healthcare: Unveiling the Hype and Addressing the Gaps

Large Language Models and Foundation Models in Healthcare: Unveiling the Hype...

Aditi Sarkar - August 4, 2023 0

UCSD's uDance: A Scalable Approach for Generating and Updating Phylogenies with Genome-wide Data

UCSD’s uDance: A Scalable Approach for Generating and Updating Phylogenies with...

Neegar Naushaba Iqbal - August 3, 2023 0

Connecting the Cellular Dots: How Single-Cell Reference Mapping Constructs and Extends Cell-type Hierarchies

Connecting the Cellular Dots with treeArches: How Single-Cell Reference Mapping Constructs...

Neegar Naushaba Iqbal - August 1, 2023 0

Beyond Biopsies: Single-Molecule Cell-Free DNA Profiling Fuels Non-Invasive Cancer Screening and Detection

Beyond Biopsies: Single-Molecule Cell-Free DNA Profiling Fuels Non-Invasive Cancer Screening and...

Neegar Naushaba Iqbal - July 30, 2023 0

Decoding the Microbial Orchestra: A Breakthrough in Metaproteomic Data Analysis and Soil Microbiome

Decoding the Microbial Orchestra: A Breakthrough in Metaproteomic Data Analysis and...

Dr. Tamanna Anwar - July 29, 2023 0

Machine Learning Magic: DNABERT-2 Empowers Enhanced Multi-Species Genomic Analysis

Machine Learning Magic: DNABERT-2 Empowers Enhanced Multi-Species Genomic Analysis

Neegar Naushaba Iqbal - July 28, 2023 1

Machine Learning Meets Virology: Scripps Scientists Unveil Tracking and Early Warning System for Viral Pandemics

Machine Learning Meets Virology: Scripps Scientists Unveil Tracking and Early Warning...

Neegar Naushaba Iqbal - July 26, 2023 0

Predicting Binding Modes with Precision: CHARMM-GUI Empowers Reliable Ligand Binding Predictions

Predicting Binding Modes with Precision: CHARMM-GUI Empowers Reliable Ligand Binding Predictions

Neegar Naushaba Iqbal - July 25, 2023 0

Automating CHARMM to GROMACS Force Field Porting with charmm2gmx: A Seamless Solution for Biomolecular Simulations

Automating CHARMM to GROMACS Force Field Porting with charmm2gmx: A Seamless...

Dr. Tamanna Anwar - July 23, 2023 0

Meet TALKIEN: A New Tool to Decipher Molecular Crosstalk Through Ligand-Receptor Interactions in Cancer

Meet TALKIEN: A New Tool to Decipher Molecular Crosstalk Through Ligand-Receptor...

Neegar Naushaba Iqbal - July 22, 2023 0

Matching RNA Sequencing Alignment Data to Genotypes Made Easy with RNA Strain-Match

Matching RNA Sequencing Alignment Data to Genotypes Made Easy with RNA...

Neegar Naushaba Iqbal - July 20, 2023 0

Exploring Uncharted Territory of Protein Folds Through De Novo Protein Design

Exploring Uncharted Territory of Protein Folds Through De Novo Protein Design

Neegar Naushaba Iqbal - July 19, 2023 2

ChatGPT meets DNA: DNAGPT, The Ultimate Tool for Multitasking DNA Sequence Analysis!

ChatGPT meets DNA: DNAGPT, The Ultimate Tool for Multitasking DNA Sequence...

Neegar Naushaba Iqbal - July 18, 2023 0

Microsoft's AI2BMD: Transforming Protein Dynamics Simulation with ab initio Accuracy

Microsoft’s AI2BMD: Transforming Protein Dynamics Simulation with ab initio Accuracy

Aditi Sarkar - July 17, 2023 0

Treating Rare Cancers with CancerGPT: Cracking the Code on Drug Pair Synergy Prediction Leveraging Large Language Model

Treating Rare Cancers with CancerGPT: Cracking the Code on Drug Pair...

Dr. Tamanna Anwar - July 16, 2023 0

TFIIH: Transcription factor IIH

The Shape Shifters of DNA: Exploring Dynamic Conformational Switching in TFIIH...

Neegar Naushaba Iqbal - July 16, 2023 0

Meet Uni-RNA: Universal Pre-trained Models Transforming the RNA Research Landscape

Meet Uni-RNA: Universal Pre-trained Models Transforming the RNA Research Landscape

Aditi Sarkar - July 15, 2023 0

Meet Mapinsights: A New Toolkit for Quality Control of High-Throughput Sequencing Data

Meet Mapinsights: A New Toolkit for Impeccable Quality Control of High-Throughput...

Neegar Naushaba Iqbal - July 14, 2023 0

Predicting Immunotherapy Response: Construction and Validation of a Machine Learning-Based Gene Expression Classifier for Primary Triple-Negative Breast Cancer

Predicting Immunotherapy Response: Construction and Validation of a Machine Learning-Based Gene...

Aditi Sarkar - July 13, 2023 1

HyenaDNA Powers Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution

HyenaDNA Powers Long-range Genomic Sequence Modeling at Single Nucleotide Resolution

Neegar Naushaba Iqbal - July 12, 2023 1

MIT’s Data-Efficient Molecular Property Predictor: Leveraging Hierarchical Grammar-Induced Geometry

MIT’s Data-Efficient Molecular Property Predictor: Leveraging Hierarchical Grammar-Induced Geometry

Aditi Sarkar - July 11, 2023 0

Decoding the Epigenomic Puzzle: Evaluating Computational Pipelines for Single-cell Histone Modification Data

Decoding the Epigenomic Puzzle: Evaluating Computational Pipelines for Single-cell Histone Modification...

Neegar Naushaba Iqbal - July 10, 2023 0

ColabDock

Meet ColabDock: A New Framework Integrating AlphaFold and Experimental Restraints for...

Aditi Sarkar - July 8, 2023 0

Multiscale Pangenome Analysis: A New Tool "PGR-TK" Improves Representation of Repetitive and Clinically Relevant Genes

Multiscale Pangenome Analysis: A New Tool “PGR-TK” Improves Representation of Repetitive...

Aditi Sarkar - July 6, 2023 0

GPT-powered Drug Discovery: Meet DrugGPT, the Game-Changing "ChatGPT" for Ligand Design

GPT-powered Drug Discovery: Meet DrugGPT, the Game-Changing “ChatGPT” for Ligand Design

Neegar Naushaba Iqbal - July 5, 2023 3

A Synergistic Approach: AlphaFold and Symmetrical Docking for Precise Protein Assembly Structure Prediction

A Synergistic Approach: AlphaFold and Symmetrical Docking for Precise Protein Assembly...

Aditi Sarkar - July 4, 2023 0

Predicting Heart Attack Risk Faster and More Accurately than Current Methods: The Role of Machine Learning in ECG Diagnosis

Predicting Heart Attack Risk Faster and More Accurately than Current Methods:...

Neegar Naushaba Iqbal - July 3, 2023 0

Guardians of Immunity: How T Cells Fight Diseases and Keep Us Healthy

Guardians of Immunity: How T Cells Fight Diseases and Keep Us...

Neegar Naushaba Iqbal - July 2, 2023 0

Explore how Artificial Intelligence revolutionizes molecular simulations, unlocking new realms of discovery and insights.

Innovating Molecular Simulations: Unleashing the Power of Artificial Intelligence for Revolutionary...

Aditi Sarkar - July 1, 2023 0

Predicting Childhood ADHD Symptoms: The Promising Role of Neurocognitive Assessments and Machine Learning

Predicting Childhood ADHD Symptoms: The Promising Role of Neurocognitive Assessments and...

Aditi Sarkar - June 30, 2023 0

Deep Encoder-Decoder Network: A Tool for Fragment Linker Prediction in PROTACs Drug Design

Deep Encoder-Decoder Network: A Tool for Fragment Linker Prediction in PROTACs...

Neegar Naushaba Iqbal - June 28, 2023 0

Transforming Healthcare: Empowering Clinicians with AutoPrognosis 2.0's Democratized Machine Learning Models

Transforming Healthcare: Empowering Clinicians with AutoPrognosis 2.0’s Democratized Machine Learning Models

Aditi Sarkar - June 27, 2023 0

Uncovering the Genetic Blueprint of Cotton: Scientists Sequence the Cotton Genome

Uncovering the Genetic Blueprint of Cotton: Scientists Sequence the Cotton Genome

Dr. Tamanna Anwar - June 26, 2023 0

BioAutoMATED: Empowering Life Scientists with Automated Machine Learning for Analyzing and Designing Biological Sequences

Meet BioAutoMATED: Empowering Life Scientists with Automated Machine Learning for Analyzing...

Neegar Naushaba Iqbal - June 25, 2023 0

AI-Powered Protein-Protein Interaction Drug Discovery Pipeline Yields a Promising SARS-CoV-2 Inhibitor

AI-Powered Protein-Protein Interaction Drug Discovery Pipeline Yields a Promising SARS-CoV-2 Inhibitor

Aditi Sarkar - June 24, 2023 0

Discovering Genome-Wide Chromatin Connections: Multiplex-GAM vs. Hi-C Showdown!

Discovering Genome-Wide Chromatin Contacts: Multiplex-GAM vs. Hi-C Showdown!

Dr. Tamanna Anwar - June 22, 2023 0

Drug-Microbiome Interactions: Machine Learning Model Predicts How Drugs Affect Gut Microbiome

Drug-Microbiome Interactions: Machine Learning Model Predicts How Drugs Affect Gut Microbiome

Aditi Sarkar - June 21, 2023 1

Exploring Molecular Alterations in Cancer with cProSite: A Web-based Tool for Genomics, Proteomics, and Phosphoproteomics Data Analysis

Exploring Molecular Alterations in Cancer with cProSite: A Web-based Tool for...

Dr. Tamanna Anwar - June 19, 2023 0

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