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D-I-TASSER Outperforms AlphaFold? A New Frontier in Protein Structure Modeling

D-I-TASSER Outperforms AlphaFold? A New Frontier in Protein Structure Modeling

Deotima Chakraborty - May 29, 2025

Unlocking Biomolecular Secrets with AF3Score: A Leap Forward in Structural Evaluation

Unlocking Biomolecular Secrets with AF3Score: A Leap Forward in Structural Evaluation

Overlapping Genes, Unfolding Insights: Synthetic Biology Meets AI

Overlapping Genes, Unfolding Insights: Synthetic Biology Meets AI

PhysDock: A New Era in Protein-Ligand Docking with AI and Physics

PhysDock: A New Era in Protein-Ligand Docking with AI and Physics

Advancing Enzyme Design: RFdiffusion2 Enables Atomic-Level Scaffold Generation

Advancing Enzyme Design: RFdiffusion2 Enables Atomic-Level Scaffold Generation

Unlocking the Microbial Universe: AllTheBacteria - Unparalleled Resource for Bacterial Genomics

Unlocking the Microbial Universe: AllTheBacteria – Unparalleled Resource for Bacterial Genomics

Deotima Chakraborty - March 15, 2024 0

BioModME: A User-Friendly Web Application for Building and Analyzing Biological Models

BioModME: A User-friendly Web Application for Building and Analyzing Biological Models

Anchal Negi - March 14, 2024 0

Exploring the Boundless Frontiers of Biomolecular Modeling and Design with RoseTTAFold All-Atom

Exploring the Boundless Frontiers of Biomolecular Modeling and Design with RoseTTAFold...

Deotima Chakraborty - March 14, 2024 0

Prostate Cancer: Beyond One Disease? AI Uncovers Hidden Diversity

Prostate Cancer: Beyond One Disease? AI Uncovers Hidden Diversity

Anchal Negi - March 13, 2024 0

Decoding Genes and Cells with GenePT: A Simple Yet Powerful Foundation Model Leveraging ChatGPT

Decoding Genes and Cells with GenePT: A Simple Yet Powerful Foundation...

Deotima Chakraborty - March 11, 2024 0

Unlocking Cellular Secrets: SCORPION's Breakthrough in Population-Level Comparisons of Gene Regulatory Networks

Unlocking Cellular Secrets: SCORPION’s Breakthrough in Population-level Comparisons of Gene Regulatory...

Anchal Negi - March 10, 2024 0

Unveiling the Potential of RiNALMo: Advancing RNA Structure Prediction with General-Purpose RNA Language Models

Unveiling the Potential of RiNALMo: Advancing RNA Structure Prediction with General-Purpose...

Deotima Chakraborty - March 8, 2024 0

Microsoft Reveals ViSNet: A Cutting-Edge Framework for Molecular Property Prediction and Simulating Molecular Dynamics

Microsoft Reveals ViSNet: A Cutting-Edge Framework for Molecular Property Prediction and...

Anchal Negi - March 7, 2024 0

Revolutionizing Protein-Nucleic Acid Binding Prediction with PNAbind: A Graph Neural Network...

Deotima Chakraborty - March 6, 2024 2

ProLLaMA: A Multi-Tasking Protein Language Model Ushering in a New Era in Protein Science

ProLLaMA: A Multi-Tasking Protein Language Model Ushering in a New Era...

Anchal Negi - March 5, 2024 0

Unveiling PTM-Mamba: Revolutionizing Proteomics with PTM-Aware Protein Language Model

Unveiling PTM-Mamba: Revolutionizing Proteomics with PTM-Aware Protein Language Model

Deotima Chakraborty - March 5, 2024 0

Unraveling Genetic Mysteries with Proformer: A Hybrid Macaron Transformer Model

Unraveling Genetic Mysteries with Proformer: A Hybrid Macaron Transformer Model

Deotima Chakraborty - March 4, 2024 0

Meet GigaPevt: The Next-Gen Medical Assistant powered by Multimodal AI

Meet GigaPevt: The Next-Gen Medical Assistant Powered by Multimodal AI

Anchal Negi - March 3, 2024 0

Eurofins Discovery Launches DiscoveryAI SAFIRE: A New AI Platform for Drug Discovery

Eurofins Discovery Launches DiscoveryAI SAFIRE: A New AI Platform for Drug...

Dr. Tamanna Anwar - March 3, 2024 0

Can AI Assistants Crack Bioinformatics Challenges? A New Study Explores the Potential of Large Language Models

Can AI Assistants Crack Bioinformatics Challenges? A New Study Explores the...

Anchal Negi - March 2, 2024 0

From Molecules to Genomes: Evo's Trailblazing Approach to Sequence Modeling and Design

From Molecules to Genomes: Evo’s Trailblazing Approach to Sequence Modeling and...

Deotima Chakraborty - March 1, 2024 0

PocketGen: A Novel Deep Generative Model for Designing Protein Binding Sites

PocketGen: A Novel Deep Generative Model for Designing Protein Binding Sites

Dr. Tamanna Anwar - March 1, 2024 0

Meet OncoGPT: Can This Medical Language Model Improve Communication and Support for Cancer Patients?

Meet OncoGPT: Can This Medical Language Model Improve Communication and Support...

Dr. Tamanna Anwar - February 28, 2024 0

AlphaFLOW and ESMFLOW: A New Approach to Modeling Protein Ensembles with Combined Power of AlphaFold and Flow Matching

AlphaFLOW and ESMFLOW: A New Approach to Modeling Protein Ensembles with...

Deotima Chakraborty - February 28, 2024 0

Unlock the Potential of DeepMod2: A Deep Learning Framework for Precise DNA Methylation Analysis using Oxford Nanopore Sequencing

Unlock the Potential of DeepMod2: A Deep Learning Framework for Precise...

Deotima Chakraborty - February 27, 2024 0

A Team of AI Scientists: Novel Framework for Scientific Discovery from Gene Expression Data

Team of AI-made Scientists: A Groundbreaking System for Automating Scientific Discovery

Anchal Negi - February 26, 2024 0

LLMs in Biomedicine: Navigating the Future with the BioChatter Open-Source Solution

LLMs in Biomedicine: Navigating the Future with the BioChatter Open-Source Solution

Dr. Tamanna Anwar - February 25, 2024 0

Unlocking New Frontiers in Drug Design: PCMol's Pioneering Integration of AlphaFold and De Novo Approaches

Unlocking New Frontiers in Drug Design with PCMol: Integrating AlphaFold and...

Deotima Chakraborty - February 24, 2024 0

Unveiling Flexiplex: A New Tool for Demultiplexing and Sequence Searching in Omics Datasets

Unveiling Flexiplex: A Versatile and Fast Demultiplexing and Sequence Searching Tool...

Dr. Tamanna Anwar - February 23, 2024 0

NIH's All of Us Research Program Unveils 275 Million New Genetic Variants, Boosting Precision Medicine Efforts

NIH’s All of Us Research Program Unveils 275 Million New Genetic...

Anchal Negi - February 23, 2024 0

Cracking the Code of Drug-Drug Interaction: DDIPrompt Unlocks a World of Safer Treatments

Cracking the Code of Drug-Drug Interaction: DDIPrompt Unlocks a World of...

Dr. Tamanna Anwar - February 22, 2024 0

AlphaFind: A New Frontier in Proteomic Exploration

AlphaFind: A New Frontier in Proteomic Exploration

Deotima Chakraborty - February 22, 2024 0

Improving Patient Care: The Role of Large Language Models in Doctors' Notes Analysis

Improving Patient Care: The Role of Large Language Models in Doctors’...

Dr. Tamanna Anwar - February 21, 2024 0

Revolutionizing Drug Discovery with CHEMGLAM: Chemical-Genomics Language Models for Compound-Protein Interaction Prediction

Revolutionizing Drug Discovery with ChemGLaM: Chemical-Genomics Language Models for Compound-Protein Interaction...

Deotima Chakraborty - February 21, 2024 0

OpenFold Unveils SoloSeq and OpenFold-Multimer: Advancing AI in Protein Structure Analysis

OpenFold Unveils SoloSeq and OpenFold-Multimer: Advancing AI in Protein Structure Analysis

Dr. Tamanna Anwar - February 20, 2024 0

Accelerating Cancer Research: MuSiCal's Accurate and Sensitive Signature Analysis Paves the Way for Targeted Therapies

Accelerating Cancer Research: MuSiCal Offers Accurate and Sensitive Mutational Signature Analysis

Anchal Negi - February 20, 2024 0

Unveiling DeepGO-SE: Advancing Protein Function Prediction Leveraging Language Models and GO Knowledge

Unveiling DeepGO-SE: Advancing Protein Function Prediction Leveraging Language Models and GO...

Deotima Chakraborty - February 19, 2024 1

A Novel GNN Model 'PathFormer' Revolutionizes Highly Accurate Disease Diagnosis and Reproducible Biomarker Identification

A Novel GNN Model ‘PathFormer’ Revolutionizes Highly Accurate Disease Diagnosis and...

Deotima Chakraborty - February 17, 2024 0

University of Michigan Researchers Discover Novel Plant Protein Fold with Potential for Anti-Cancer Drugs

University of Michigan Researchers Discover Novel Plant Protein Fold with Potential...

Dr. Tamanna Anwar - February 16, 2024 0

Meet Proteus: Transforming the Landscape of Protein Design with Innovation and Efficiency

Meet Proteus: Transforming the Landscape of Protein Design with Innovation and...

Dr. Tamanna Anwar - February 16, 2024 0

DANCE Unveils Hidden Depths of Protein Families Conformational Diversity through Molecular Motions

DANCE Unveils Hidden Depths of Protein Movement, Paving the Way for...

Anchal Negi - February 16, 2024 0

Beyond One-Size-Fits-All: Moffitt Unveils First Individualized Predictive Model for the Treatment of Multiple Myeloma

Beyond One-Size-Fits-All: Moffitt Unveils First Individualized Predictive Model for the Treatment...

Deotima Chakraborty - February 15, 2024 0

Unlocking the Potential of RNA Design with Generative AI using GenerRNA

Unlocking the Potential of RNA Design with Generative AI using GenerRNA

Dr. Tamanna Anwar - February 14, 2024 0

GPCR-BERT: Revolutionizing GPCR Research with Protein Language Models

GPCR-BERT: Revolutionizing GPCR Research with Protein Language Models

Dr. Tamanna Anwar - February 13, 2024 0

tFold Unveiled: A Swift and Accurate Approach to Antibody-Antigen Complex Modeling and Design

tFold Unveiled: A Swift and Accurate Approach to Antibody-Antigen Complex Modeling...

Anchal Negi - February 13, 2024 0

Choosing the Best Tool for Identifying Transcriptional Regulators: Navigating the NGS Landscape

Choosing the Best Tool for Identifying Transcriptional Regulators: Navigating the NGS...

Anchal Negi - February 12, 2024 0

Unveiling the Power of Deep-Learning: A Comprehensive Benchmark of Tertiary RNA Structure Prediction Methods

Unveiling the Power of Deep Learning: A Comprehensive Benchmark of Tertiary...

Deotima Chakraborty - February 12, 2024 0

Making AI-Driven Structural Biology Accessible with Foldy

Making AI-Driven Structural Biology Accessible with Foldy

Dr. Tamanna Anwar - February 11, 2024 0

MarkerGeneBERT: Revolutionizing Cell Marker Extraction Utilizing Natural Language Processing

MarkerGeneBERT: Revolutionizing Cell Marker Extraction Utilizing Natural Language Processing

Anchal Negi - February 10, 2024 0

CombFold: Advancing Protein Complex Assembly Structure Prediction Harnessing Combinatorial Assembly Algorithm and AlphaFold2

CombFold: Advancing Structure Prediction of Large Protein Assemblies with Combinatorial Algorithms...

Deotima Chakraborty - February 9, 2024 0

Unleashing nanoBERT: Revolutionizing Nanobody Therapeutics with Deep Learning

Unleashing nanoBERT: Revolutionizing Nanobody Therapeutics with Deep Learning

Dr. Tamanna Anwar - February 9, 2024 0

UChicago Scientists Crack the Code of HIV Entry into the Nucleus of the Cell: Could it Lead to New Treatment Strategies?

UChicago Scientists Crack the Code of HIV Entry into the Nucleus...

Deotima Chakraborty - February 8, 2024 0

reguloGPT Unleashed: GPT-Powered Knowledge Graphs Illuminate Molecular Regulatory Pathways

reguloGPT Unleashed: GPT-Powered Knowledge Graphs Illuminate Molecular Regulatory Pathways

Deotima Chakraborty - February 7, 2024 0

Has ESM-2 Truly Learned the Language of Protein Folding?

Has ESM-2 Truly Learned the Language of Protein Folding?

Anchal Negi - February 6, 2024 0

Revolutionize RNA Structure Prediction with RNA3DB: The Pinnacle Dataset for Training Deep Learning Models

Revolutionize RNA Structure Prediction with RNA3DB: The Pinnacle Dataset for Training...

Dr. Tamanna Anwar - February 6, 2024 1

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