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Insight into structural features of Hepatitis E: Structural prediction models of hepatitis E virus (HEV)

Insight into Structural Features of Hepatitis E: Princeton Researchers Discover New...

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Scientists from Princeton University have developed a comprehensive model of the structure and function of the open reading frame (ORF) 1 of Hepatitis E...
NeuronChat Sheds Light on Neuron-Neuron Communication in the Brain through Single-cell Transcriptomics Analysis

NeuronChat Sheds Light on Neuron-Neuron Communication in the Brain through Single-cell...

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Scientists from the University of California, Irvine, have developed NeuronChat for inferring inter-neuronal communication using single-cell transcriptomics data. Previous cell-cell communication inference methods are...
Organoid Intelligence is the New Energy-efficient Biocomputing Alternative to Artificial Intelligence

From Cell Cultures to Intelligent Systems: “Organoid Intelligence” is the New...

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Scientists from Johns Hopkins University lay out the possibility of energy-efficient biocomputing using brain organoids (3D brain cell cultures) that surpass in-silico computing capabilities. The recent...
Improving the Accuracy of RNA-Protein Complex Prediction with DRPScore: A Deep Learning Algorithm

Improving the Accuracy of RNA-protein Complex Structure Prediction with DRPScore: A...

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Scientists have developed a new deep-learning-based approach called DRPScore for identifying native-like RNA-protein complexes essential for understanding cellular processes. DRPScore outperforms existing methods in...
The workflow of the ASGARD drug repurposing pipeline using a single-cell RNA sequencing data

Repurposing Drugs Simplified with ASGARD: A Single-cell Guided Pipeline

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Scientists from the University of Michigan have developed a single-cell guided pipeline to aid the repurposing of drugs (ASGARD) by defining a drug score...
Designing High-Activity Luciferases with Deep Learning

Designing High-Activity Luciferases with Deep Learning: A Promising Approach for Enzyme...

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For many years, scientists have been baffled by the difficult task of designing enzymes, which is regarded as one of the most difficult challenges...
LongBondEliminator

LongBondEliminator: A Novel Approach to Streamlining Molecular Dynamics Simulations

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Scientists from Michigan State University have introduced the LongBondEliminator, a tool designed to detect and correct ring penetrations in molecular simulations. Ring penetrations is...
DeepBIO: An Automated Deep Learning Platform for High-Throughput Functional Analysis of Biological Sequences

Meet DeepBIO: An Automated Deep Learning Platform for High-Throughput Functional Analysis...

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Scientists from China have developed DeepBIO, an automated and interpretable deep learning platform for high-throughput biological sequence functional analysis. The first-of-its-kind platform enables researchers...
NHGRI's Verkko Algorithm: An Advancement in Genome Assembly with Notable Limitations

NHGRI’s Verkko Algorithm: An Advancement in Genome Assembly with Notable Limitations

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Substantial progress has been made in assembling the first complete human genome sequence by the Telomere-to-Telomere consortium. However, complex repetitions in diploid genomes are...
Single-Cell RNA Sequencing: State-of-the-Art Technology and Future Prospects

Single-Cell RNA Sequencing: State-of-the-Art Technology and Future Prospects

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Single-cell RNA sequencing (scRNA-seq) has proved to be a powerful tool for deciphering the entire repertoire of transcripts in a single cell. Traditional sequencing...
Big Data Analytics Reveals New Causal Pathways in Alzheimer's Disease

Big Data Analytics Reveals New Causal Pathways in Alzheimer’s Disease

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King's College London scientists examined biological samples from hundreds of participants in a European study. The researchers studied the biological data at different stages,...
Whole-Genome Population Genomics Made Easy with "PRAWNS": A Comprehensive Tool for Multiple-genome Analysis

Whole-Genome Population Genomics Made Easy with “PRAWNS”: A Comprehensive Tool for...

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Scientists from the University of Maryland have developed PRAWNS, a scalable and efficient tool for multi-genome analysis. With the unprecedented number of complete and...
From healthy cell to cancerous growth: the alarming role of poisoned proteins in tumor formation

From healthy cell to cancerous growth: the alarming role of “poisoned”...

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Researchers from Scripps Research and Japan have discovered how a protein's "poisoned" form can set off a chain of events promoting specific cancers' growth....
MinsePIE: A Machine Learning Algorithm to Predict Successful Insertion of Gene-Edited DNA Sequences in the Genome of a Cell

Meet MinsePIE: A ML Tool to Predict Successful Insertion of Gene-edited...

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Scientists from the Wellcome Sanger Institute, Hinxton, UK, and the University of Tartu, Estonia, have developed a machine learning-based algorithm, MinsePIE, to predict prime...
Local Creek Holds Secret to Fighting Deadly Infections: Newly Discovered Virus Kills Resistant Bacteria

Local Creek Holds Secret to Fighting Deadly Infections: Newly Discovered Virus...

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Scientists from the University of Southern Denmark have made an interesting discovery that may help in the fight against antibiotic-resistant bacteria. The research team...
Unlocking the Mystery of Cancer Cell Movement: Logic Gates Provide Answers

Unlocking the Mystery of Cancer Cell Movement: Logic Gates Provide Answers

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Scientists from Purdue University unravel cell migration direction under the influence of environmental cues using a ternary logic gate system. Cells detect several environmental...
idpGAN: A New Era in Protein Conformational Ensemble Generation: The Role of Machine Learning

A New Era in Protein Conformational Ensemble Generation: The Role of...

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The biological activity of a protein is determined not only by its static, three-dimensional structure but also by its dynamic characteristics, which form a...
m6Anet: A Multiple Instance Learning based Neural Network Model for RNA Modification Prediction

Meet m6Anet: A Multiple Instance Learning based Neural Network Model for...

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Scientists from the Genome Institute of Singapore and A*STAR Singapore have developed a neural network-based method that implements a multi-instance learning framework, "m6Anet," to...
From Data to Diagnosis: Leveraging EHR Data to Identify Autism Within 30 Days using Machine Learning

From Data to Diagnosis: Leveraging EHR Data to Identify Autism within...

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Autism Spectrum Disorder (ASD), also known as autism, is a global health issue affecting millions of children worldwide. According to the World Health Organization...
AlphaFold Coupled with other AI Tools Accelerates the Drug Discovery Process

AlphaFold Teams up with Other AI Tools to Accelerate the Drug...

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Structure-based drug discovery (SBDD) is a standard method for identifying prospective medications for a target by leveraging its structural information. AlphaFold, a technique for...
Mystery of Unique Fingerprint Pattern Formation

Scientists Unlock the Mystery of Unique Fingerprint Pattern Formation

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Scientists from Edinburgh have solved the mystery behind the formation and variation in fingerprint patterns. Fingerprints are complex patterns, unique to every individual, and...
The Fight Against Tuberculosis Takes a Major Step Forward: Scientists Find Flaws in Bacterium by Studying Ferredoxins

The Fight Against Tuberculosis Takes a Major Step Forward: Scientists Find...

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Researchers from Skoltech, MIPT, the National Academy of Sciences of Belarus' Institute of Bioorganic Chemistry (IBOCH NAS), and the Russian Academy of Sciences' Institute...
Scientists Created a Pan-3D Genome of Soybean to Decipher Structural and Functional Differentiation

Scientists Created a Pan-3D Genome of Soybean to Decipher Structural and...

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Scientists from China have recently performed pan-3D genome analysis for soybean genomes to investigate the interplay among 3D genomic variations, structural variations (SV) as...
Speech Analysis Meets Artificial Intelligence: The Promise of Deep Learning for Depression Detection

Speech Analysis Meets Artificial Intelligence: The Promise of Deep Learning for...

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Scientists at Jinhua Advanced Research Institute and Harbin University of Science and Technology have developed a deep-learning algorithm that can identify depression through speech....
Overview of the protocol for design of peptide inhibitors of a target PPI

Generative Models for Peptide Design: Discovering Calcineurin Protein-protein Interactions Disruptors

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All organisms depend on protein-protein interactions (PPIs) for cellular and biological activities. This paper introduces a novel method for building peptide binders for "undruggable"...
Discovering the Origin of Antibiotic Resistance through DNA Replication Protein Structure Analysis

Discovering the Origin of Antibiotic Resistance through DNA Replication Protein Structure...

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Scientists from Barcelona have discovered a new hexameric protein structure for the RepB protein, which is involved in catalyzing replication initiation in Streptococcal plasmid...
POPDx overview: Rare Disease Prediction: Machine Learning Takes the Lead

The Future of Rare Disease Prediction: Machine Learning Takes the Lead

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The POPDx model does not require extensive patient datasets, which makes it potentially useful for patients with rare diseases. The POPDx framework was created to...
Overview of reconstructed drugs and annotated drug enzymes present in AGORA2

AGORA2: The Key to Personalized Medicine through Genome-wide Metabolic Reconstruction of...

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The digestive system is home to trillions of bacteria, which are very different in each person based on their gender, age, race, lifestyle, and...
In-depth Mapping of Protein Localizations in Whole Tissue using Micro-scaffold Assisted Spatial Proteomics (MASP)

In-depth Mapping of Protein Localizations in Whole Tissue Using Micro-scaffold Assisted Spatial...

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Researchers from the Jun Qu lab at SUNY Buffalo, New York, have developed a revolutionary method for in-depth mapping of protein localization in whole...
Nutrient that Cancer Cells Crave

New Hope in the Fight Against Cancer: Scientists Discover Nutrient that...

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Cancer is one of the prominent causes of death globally, and discovering new methods to prevent and cure it is important for public health....
Computational and experimental pipeline of RESP

Expediating the Discovery of Super Tight-Binding Antibodies with an AI Model...

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Scientists from UCSD have devised an efficient AI-based pipeline, RESP, for identifying high-affinity antibodies. Typically, researchers would employ directed evolution to enable iterative mutagenesis...
AlphaFill: An AI Algorithm that Implants Ligands and Cofactors in AlphaFold Models

Meet AlphaFill: An AI Algorithm to Fill Missing Ligands and Cofactors...

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According to Levinthal's paradox, each protein may adopt around 10300 distinct structures. We now know 3-D structures for about 98% of the human proteome...
DGNN-DDI: A Cutting-edge Tool for Drug-Drug Interaction Prediction using Dual Graph Neural Network

DGNN-DDI: A Cutting-edge Tool for Drug-Drug Interaction Prediction using Dual Graph...

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Scientists from Shaanxi Normal University, China, developed a novel Drug-Drug-Interactions (DDI) prediction tool that implements a dual graph neural network architecture to incorporate chemical...
Connection Between Immune Response & Persistent Smell Loss Post-COVID-19

New Study Finds Connection Between Immune Response & Persistent Smell Loss...

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Most SARS-CoV-2 patients experience anosmia, or a loss of smell, which can linger for months after recovery. According to olfactory epithelium samples taken from...
ZFDesign: A Universal Deep Learning Model for Zinc Finger Design Enabling Transcription Factor Reprogramming

Meet ZFDesign: A Universal Deep Learning Model for Zinc Finger Design...

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Controlling gene expression by engineering Cys2His2 zinc finger (ZF) domains to bind particular target sequences in the genome has many therapeutic applications. However, due...
A Tabular Machine Learning Approach to Pan-cancer Tumor-only Variant Calling

Machine Learning in Oncology: A Tabular Machine Learning Approach to Pan-cancer...

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Accurately identifying somatic mutations and differentiating them from germline variations is critical for precision oncology and precise tumor-mutational burden (TMB) computation. For this purpose,...
De novo protein generation with conditional language model ProGen

AI Proteins: Unlocking the Potential of Protein Generation from Scratch with...

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Scientists from the University of California, San Francisco, have created an inventive AI system that can create entirely new enzymes from scratch. Even though...
Navigating the choice of informatics software and tools for lipidomics research. Providing a Lipidomics Tools Guide on LIPID MAPS.

Luminary for Lipidomics Research Applications: Guiding the Choice of Informatics Software...

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There has been an increase in research in numerous areas of biology and medicine due to the development of mass spectrometry lipidomics. As a...
De Novo Drug Design Using Generative Deep Learning: The Role of Chemical Language Models with Molecular Structures and Bioactivity

De Novo Drug Design Using Generative Deep Learning: Implementing Chemical Language...

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Chemical language models (CLMs) can be used to construct molecules with desired features. Textual representations of novel chemical structures, such as simplified molecular input...
protein structure and function characterization

ML meets Structural Bioinformatics: Novel Machine Learning Approaches Transforming Protein Research...

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Scientists from University College London, UK, study the Machine Learning (ML) approaches that have successfully closed the ever-widening gap between large amounts of protein...
Drug-Targeted Genome Interactions with a New DNA Sequencing Method Chem-map

Discovering the Secrets of Drug-Targeted Genome Interactions with a New DNA...

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Scientists from the University of Cambridge have introduced a cutting-edge DNA sequencing method that can precisely pinpoint the location and mechanism of small molecule...
Understanding of Viruses with Complete Reconstruction

Aston University Paves the Way for New Understanding of Viruses with...

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Aston University scientists have made a groundbreaking discovery in the field of virology. They were able to create a 3D model of the virus...
Espresso

Meet “Espresso”: The Solution for Accurate Quantification of Transcript Isoforms in...

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The Children's Hospital of Philadelphia (CHOP) scientists have created ESPRESSO, a new computational tool for analyzing RNA-seq data. ESPRESSO aims to improve the detection...
Federated Learning Deployed Across Hospitals to Train Deep Learning Models Securely

Revolutionizing Healthcare: Federated Learning Deployed Across Hospitals to Train Deep Learning...

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Owkin, an AI biotech company, has successfully used federated learning (FL) for the first time to train deep learning models on histopathology data from...
Deep Learning and Radiomics: A Game-Changer for Identifying Glioblastoma and Brain Metastasis

Deep Learning and Radiomics: A Game-changer for Identifying Glioblastoma and Brain...

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According to a recent study from Karl Landsteiner University of Health Sciences (KL Krems), using radiomics and deep learning algorithms can quickly and accurately...
ImageMol – A Powerful Self-supervised Image Representation Learning Framework for Accurate Prediction of Molecular Properties and Drug Targets

ImageMol – A Powerful Self-supervised Image Representation Learning Framework for Accurate...

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Scientists from Case Western Reserve University, Cleveland, USA, developed a self-supervised image representation learning framework, "ImageMol," for predicting molecular properties and drug targets with...
BioNTech's Acquisition of InstaDeep Set to Revolutionize AI-Powered Drug Discovery, Design, and Development

BioNTech’s Acquisition of InstaDeep Set to Revolutionize AI-Powered Drug Discovery, Design,...

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BioNTech, a leading biopharmaceutical company, has announced plans to fully acquire InstaDeep, an artificial intelligence company specializing in drug discovery, design, and development. This...
Phosphorylation-site motif tree of the human Ser/Thr kinome

Discovering the Secrets of the Human Kinome: An Atlas of Substrate...

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Researchers from MIT have created a comprehensive map of over 300 protein kinases and their targets, with the goal of potentially discovering new cancer...
Lung Cancer's Immune Evasion Tactics

Uncovering Lung Cancer’s Immune Evasion Tactics: Groundbreaking Study Sheds Light on...

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Lung cancer is one of the most common and deadly types of cancer worldwide, and the ability of cancer cells to evade the body's immune system poses a significant challenge in treating it. A team of Weill Cornell Medicine scientists recently made a significant breakthrough in understanding this process. They discovered a genetic signature that can predict patient survival and identified a key mechanism lung cancer cells use to avoid immune attacks. This groundbreaking discovery could hasten the development of treatments that can circumvent tumor defense mechanisms, increasing the chances of survival for lung cancer patients. The signaling pathway involving IRE1 and XBP1 is becoming increasingly recognized as a key player in cancer progression and immune system suppression in various...
SPICEMIX: A Machine Learning Approach for Improved Cell Identity Understanding

Meet SPICEMIX: A Machine Learning Approach for Improved Cell Identity Understanding

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Scientists from Carnegie Mellon University developed SPICEMIX, a machine learning method that allows researchers to better understand the contribution of various spatial patterns to...

Must Read

Teaching Genomics Made Easy: Meet eduomics, the Automated Omics Simulation Pipeline

Teaching Genomics Made Easy: Meet eduomics, the Automated Omics Simulation Pipeline

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When researchers at the Department of Biology and Biotechnology, the University of Pavia, set out to rethink bioinformatics teaching. They started from a simple...
Unlocking Cellular Mysteries with CellReasoner: A New AI Tool for Biologists

Unlocking Cellular Mysteries with CellReasoner: A New AI Tool for Biologists

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In the rapidly evolving field of single-cell biology, accurately identifying cell types from complex datasets remains a cornerstone of research. A team of scientists...
Minimal Data, Maximal Impact: The Future of Peptide Design with MDMI

Minimal Data, Maximal Impact: The Future of Peptide Design with MDMI

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Peptides, which are short chains of amino acids, have become increasingly important in the world of medicine and biotechnology. Their unique properties make them...
Can Machine Learning Finally Crack the Protein Expression Code?

Can Machine Learning Finally Crack the Protein Expression Code?

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A team of researchers from the University of Edinburgh and collaborators from institutions like Stanford and UC San Francisco have tackled a central question...
AlphaGenome

AlphaGenome: DeepMind’s New AI Model for Unlocking Genome Function

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Imagine holding a book written in a language where only 2% of the pages contain clear instructions, while the remaining 98% seem like indecipherable...