BIOINFORMATICS TOOLS

Phylogenetic Analysis

  • MEGA – Molecular Evolutionary Genetics Analysis package. It is a computer software for conducting automatic and manual sequence alignment and constructing phylogenetic trees.
  • Phylip – It is a free package of programs for inferring phylogenies.
  • PAML – A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood.
  • DAMBE – Software package for extensive Data Analysis in Molecular Biology and Evolution
  • iTOL – Interactive Tree Of Life is an online tool for the display, annotation and management of phylogenetic and other trees.

Must Read

PocketGen: A Novel Deep Generative Model for Designing Protein Binding Sites

PocketGen: A Novel Deep Generative Model for Designing Protein Binding Sites

0
The ability to accurately model and redesign ligand binding sites (pockets) on protein surfaces holds tremendous value across fields like drug discovery, enzyme engineering,...
Meet OncoGPT: Can This Medical Language Model Improve Communication and Support for Cancer Patients?

Meet OncoGPT: Can This Medical Language Model Improve Communication and Support for Cancer Patients?

0
OncoGPT is a customized language model created by Shenzhen Kanghua Juntai Biotech Co. Ltd. researchers in China that is intended to deliver precise medical...
AlphaFLOW and ESMFLOW: A New Approach to Modeling Protein Ensembles with Combined Power of AlphaFold and Flow Matching

AlphaFLOW and ESMFLOW: A New Approach to Modeling Protein Ensembles with Combined Power of...

0
Dynamic structural ensembles play a major role in the biological functions of proteins. For the purpose of learning and sampling the conformational landscapes of...
Unlock the Potential of DeepMod2: A Deep Learning Framework for Precise DNA Methylation Analysis using Oxford Nanopore Sequencing

Unlock the Potential of DeepMod2: A Deep Learning Framework for Precise DNA Methylation Analysis...

0
Reduced representation methylation sequencing for CpG islands or imprinted areas is made possible by Oxford Nanopore sequencing, which offers a distinct advantage over other...
A Team of AI Scientists: Novel Framework for Scientific Discovery from Gene Expression Data

Team of AI-made Scientists: A Groundbreaking System for Automating Scientific Discovery

0
Scientists from the University of Illinois, in collaboration with experts in the field, have unveiled a cutting-edge system named the "Team of AI-made Scientists."...