Friday, June 2, 2023

BIOINFORMATICS TOOLS

Gene Prediction

  • GENEID – A program to predict genes, exons, splice sites and other signals along a DNA sequence.
  • AUGUSTUS – Program that predicts genes in eukaryotic genomic sequences.
  • EuGene – Integrative gene finder for eukaryotic and prokaryotic genomes.
  • PseudoPipe – A stand alone computational pipeline for pseudogene annotation.
  • GenScan – Web server for the identification of complete gene structures in genomic DNA.
  • HMMgene – 1.1 – Program for prediction of vertebrate and C. elegans genes.

Must Read

Exploring Protein Modifications in Metabolic Diseases: Molecular Mechanisms and Therapeutic Strategies

Exploring Protein Modifications in Metabolic Diseases: Molecular Mechanisms and Therapeutic Strategies

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Comprehensive introspection of cellular and molecular level aberrations that prompted the worldwide prevalence of life-threatening Non Communicable Diseases like Diabetes, Obesity, Hypertension, Nonalcoholic Fatty...
Meet MDASAE: A Novel Microbe-Drug Association Prediction Model

Meet MDASAE: A Novel Microbe-Drug Association Prediction Model

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Scientists from the Hengyang Normal University, China, designed a stacked autoencoder (SAE) with a multi-head attention mechanism-based microbe drug association prediction model named MDASAE....
Repurposing 'Failed' Antibiotics: A Promising Approach for Herbicide Development

Repurposing ‘Failed’ Antibiotics: A Promising Approach for Herbicide Development

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Resilient weeds, impervious to herbicides, present a grave danger to both the environment and the agricultural sector. The pressing demand for fresh herbicides, armed...
Transforming Natural Product Identification Through Deep Self-Supervised Learning Language Models

Transforming Natural Product Identification through Deep Self-Supervised Learning Language Models

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Scientists from the Microsoft Research Lab, Cambridge, have designed a Self-Supervised Neural Network Masked Language Model named BiGCARP to accelerate the identification and classification...
Accelerating Genomic Analysis with GPUs: Meet the Genomics-GPU Benchmark Suite

Accelerating Genomic Analysis with GPUs: Meet the Genomics-GPU Benchmark Suite

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Genomic analysis plays a vital role in various areas, such as disease detection, drug development, and genetic disease identification. With the exponential growth of...