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WikiPathways 2024: A Next-Generation Pathway Database

Anchal Negi - 0
WikiPathways is an open-access biological pathway database that was first launched in 2007.  It is still being developed and updated by a group of...
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AI

Speed and Precision in Medical Imaging: The Promise of ScribblePrompt

Deotima Chakraborty - 0
Clinical care as well as scientific research depend heavily on biomedical image segmentation. Certain biomedical picture segmentation tasks can be accurately automated by deep...
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Big Data

Personalizing Pangenomes: A New Approach to Reduce Reference Bias

Anchal Negi - 0
In a groundbreaking study published in Nature Methods, a group of scientists consisting of the UC Santa Cruz Genomics Institute, University of Ferrara, Google...
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AI

ProteinBench: Unveiling the True Potential of Protein Foundation Models

Deotima Chakraborty - 0
A notable progress in protein prediction and generative tasks, such as 3D structure prediction, protein design, and conformational dynamics, has been made in recent...
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AI

How Are Transformer Models Bridging the Gap Between Data and Drug Discovery?

Anchal Negi - 0
A recently published work by researchers from the Wuhan Textile University, China, and Michigan State University, USA, has addressed the use of transformer models...
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AI

Unlocking Molecular Dynamics: Dynaformer, a Graph-Based Deep Learning Model for Binding Affinity Prediction

Team CBIRT and Deotima Chakraborty - 0
One major obstacle in structure-based drug design is accurately predicting the affinities of protein-ligand interaction. The accuracy of data-driven affinity prediction methods has improved...
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Bioinformatics

Can We Measure Protein Interactions at Unprecedented Scale? MP3-seq Says Yes!

Deotima Chakraborty - 0
Numerous biological processes are regulated by protein-protein interactions (PPIs), and modified PPIs have uses in gene and cell therapy. Here, researchers from the University...
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AI

ChatMol: Pioneering Conversational Molecular Design with AI

Anchal Negi - 0
ChatMol, an innovative AI model designed by Tsinghua University, PingAn Technology, and Beijing University of Posts and Telecommunications researchers, shapes the contours of the...
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AI

AlphaProteo: Google DeepMind’s AI Revolution in Protein Design

Deotima Chakraborty - 0
Protein-binding protein computational design is a key skill with many applications in biotechnology and biological research. While some target proteins have been successfully targeted...
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AI

Breakthrough in Virtual Screening: OpenVS a Game-Changer for AI-Powered Drug Discovery

Anchal Negi - 0
In a recent study published in Nature Communications, researchers at the University of Washington, University of California, San Francisco, and University of Michigan, along...
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News

Shaping the Future of Enzyme Catalysis: Advances in the Computational Design of Serine Hydrolases

Deotima Chakraborty - 1
Enzymes can mediate discrete chemical reactions with sub-angstrom precision by employing complex, polar active sites to ensure a precise and effective response. Using the...
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Bioinformatics

How Scripps Research Is Pioneering New Approaches to Slow Cancer Growth

Neermita Bhattacharya - 0
To fight cancer, we must stop their metastasis or uncontrolled multiplication. Hence, it is important to understand what proteins these cancer cells need for...
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AI

Are We Closer to Mapping the Full Conformational Landscape of Proteins?

Anchal Negi - 0
Proteins perform enormous tasks in our cells as molecular machines. These functions rely on the structural plasticity or the ability to adopt multiple shapes...
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AI

Unlocking Protein Secrets: AlphaFold-SFA’s Breakthrough in Cryptic Pocket Discovery

Deotima Chakraborty - 1
Rare events in proteins, which are essential for comprehending intricate phenomena like transitory structural changes and protein-ligand interactions, are frequently missed by unbiased molecular...
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AI

Navigating the AlphaFold Universe with DPCstruct’s Domain-Level Classification

Neermita Bhattacharya - 0
AlphaFold is a database of protein structures and predictions. It contains predictions for ~214 million proteins. AlphaFold2, developed by DeepMind, has dramatically scaled our...
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AI

Revolutionary One-Step Approach: Predicting and Screening Protein-Ligand Complexes with Geometric Deep Learning

Deotima Chakraborty - 0
Deep learning is being utilized in the course of drug development to understand the structure of the protein-ligand complex, utilizing the technique of virtual...
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AI

ProteinGPT: Streamlining Complex Protein Analysis Through Conversational AI

Anchal Negi - 0
ProteinGPT was developed jointly by specialists from the University of California in Los Angeles and the Georgia Institute of Technology and Meta AI. The...
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AI

CellTracksColab: A Breakthrough Platform for Cell Tracking Data Analysis

Neermita Bhattacharya - 0
Understanding complex cellular behaviors quantitatively is essential for gaining in-depth insights into cell biology. Tracking the movement and interactions (movies) of cells over time...
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Bioinformatics

WebAtlas: A Powerful Tool for Integrated Single Cell and Spatial Transcriptomic Data Analysis

Anchal Negi - 0
A recent study by Tong Li and colleagues from the Wellcome Sanger Institute and other institutions introduces WebAtlas, an innovative pipeline aimed at addressing...
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AI

DeepEnzyme Improves Enzyme Turnover Prediction Accuracy Leveraging Deep Learning and Protein 3D-Structure Features

Deotima Chakraborty - 0
In synthetic biology, turnover numbers (kcat) — a critical measure of an enzyme's efficiency—have a variety of applications. On the other hand, kcat measurement...
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Breaking New Ground in Protein Function Prediction with Protein-Mamba

Breaking New Ground in Protein Function Prediction with Protein-Mamba

Anchal Negi - 0
Determining the function of proteins is one defining aspect of molecular biology that also carries great potential in drug discovery and development. A better...
The Future of Cell Modeling: Building Virtual Cells with Artificial Intelligence

The Future of Cell Modeling: Building Virtual Cells with Artificial Intelligence

Deotima Chakraborty - 0
One of the most important concepts in biology is the cell, which is perhaps the smallest unit of life. This understanding and identifying the...
Unleashing the Power of Dynamics: A 4D Diffusion Approach to Protein Structure Prediction

Unleashing the Power of Dynamics: A 4D Diffusion Approach to Protein Structure Prediction

Deotima Chakraborty - 0
The ability to anticipate the structure of proteins is essential for improving biological research, developing new pharmaceuticals, and designing experiments. It also helps to...
Everlasting Memory: Storing the Human Genome on a 5D Crystal

Everlasting Memory: Storing the Human Genome on a 5D Crystal

Anchal Negi - 0
In a remarkable corridor of achievement, the scientists of the University of Southampton have reputedly gotten the ability to conserve the complete human genomic...
Unveiling Druggable Pockets with PocketVec: A Comprehensive Approach with Binding Site Descriptors

Unveiling Druggable Pockets with PocketVec: A Comprehensive Approach with Binding Site Descriptors

Deotima Chakraborty - 0
Target-based drug development depends heavily on characterizing druggable pockets, which are protein areas with the capacity to bind organic small molecules. Nevertheless, the process...

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