BIOINFORMATICS TOOLS

Gene Prediction

  • GENEID – A program to predict genes, exons, splice sites and other signals along a DNA sequence.
  • AUGUSTUS – Program that predicts genes in eukaryotic genomic sequences.
  • EuGene – Integrative gene finder for eukaryotic and prokaryotic genomes.
  • PseudoPipe – A stand alone computational pipeline for pseudogene annotation.
  • GenScan – Web server for the identification of complete gene structures in genomic DNA.
  • HMMgene – 1.1 – Program for prediction of vertebrate and C. elegans genes.

Must Read

D&D-seq

How D&D-seq Is Making Hard-to-Detect DNA-Protein Interactions Visible

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BioReason-Pro

BioReason-Pro Allows Structured Reasoning for Protein Function Predictions

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A team of scientists from the University Health Network - Canada's Hospital, Arc Institute and Vector Institute developed BioReason-Pro to tackle one of the...
PPIscreenML

PPIscreenML: A Rigorous Machine Learning Approach to Screening Protein-Protein Interactions with AF2

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FrustrAI-Seq

Meet FrustrAI-Seq: Proteome-Wide Frustration Profiling Without Structural Inputs

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Proteins are remarkable molecules. They fold, bend, bind, and catalyze, all while balancing an internal tension that most biology textbooks barely mention. That tension...
PandaClaw

Insilico Medicine’s PandaClaw: An Agentic AI for Therapeutic Discovery

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For decades, the bottleneck in drug discovery wasn't the biology; it was the translation. Getting from a disease hypothesis to a viable therapeutic target...