BIOINFORMATICS TOOLS
Gene Prediction
- GENEID – A program to predict genes, exons, splice sites and other signals along a DNA sequence.
- AUGUSTUS – Program that predicts genes in eukaryotic genomic sequences.
- EuGene – Integrative gene finder for eukaryotic and prokaryotic genomes.
- PseudoPipe – A stand alone computational pipeline for pseudogene annotation.
- GenScan – Web server for the identification of complete gene structures in genomic DNA.
- HMMgene – 1.1 – Program for prediction of vertebrate and C. elegans genes.
Must Read
Towards Fully Autonomous Molecular Dynamics: The DynaMate Framework
Researchers from École Polytechnique Fédérale de Lausanne (EPFL) and the National Centre of Competence in Research (NCCR) Catalysis, Switzerland, introduced DynaMate, an autonomous AI system that...
How SPURS Unlocks Scalable and Accurate Protein Stability Prediction
Protein engineering is in the middle of a quiet revolution, and a new study from researchers at the School of Computational Science and Engineering,...
Placing Every Atom Right: PEARL’s Deep Learning Approach to Drug Discovery
Genesis Molecular AI and NVIDIA have introduced PEARL (Placing Every Atom in the Right Location), a deep learning foundation model designed for large-scale protein–ligand cofolding...
Agentic AI Meets RNA‑seq: A New Co‑Pilot For Downstream Analysis
Next-generation sequencing has transformed gene expression profiling into a routine experiment, but interpreting those matrices remains a challenge for many labs. Researchers from Kyungpook...
Teaching Genomics Made Easy: Meet eduomics, the Automated Omics Simulation Pipeline
When researchers at the Department of Biology and Biotechnology, the University of Pavia, set out to rethink bioinformatics teaching. They started from a simple...





