BIOINFORMATICS TOOLS
Gene Prediction
- GENEID – A program to predict genes, exons, splice sites and other signals along a DNA sequence.
- AUGUSTUS – Program that predicts genes in eukaryotic genomic sequences.
- EuGene – Integrative gene finder for eukaryotic and prokaryotic genomes.
- PseudoPipe – A stand alone computational pipeline for pseudogene annotation.
- GenScan – Web server for the identification of complete gene structures in genomic DNA.
- HMMgene – 1.1 – Program for prediction of vertebrate and C. elegans genes.
Must Read
IntelliFold-2: An Open Source Alternative to AlphaFold 3 With Better Accuracy and Robustness
The innovators behind intelliFold-2 at IntelliGen AI emphasize that IntelliFold-2 is designed as a state-of-the-art open source alternative to AlphaFold3 with stronger performance in...
How AI Predicts Whether a Drug Actually Works—Not Just Fits
There is a question that has quietly haunted drug discovery for decades, one that sounds almost too basic to be a problem. A molecule...
Transforming All-Atom De Novo Design of Protein Design Using RFdiffusion3
A major collaboration led by David Baker’s group at the Institute for Protein Design (UW) introduced RFdiffusion3 (RFD3), a next-generation version of the originally...
MHub.ai: Standardizing AI for Reproducible Medical Imaging
An inter-institutional collaboration across the US, Germany, and the Netherlands introduces MHub.ai, an accessibility and reproducibility-prioritizing, open source platform for standardized access to AI...
ConGLUDe: Toward General-Purpose Foundation Models for Drug Discovery
Researchers from Johannes Kepler University Linz, Austria, and Merck HealthCare, Germany, developed ConGLUDe (Contrastive Geometric Learning for Unified Computational Drug Design), an AI-based model for drug...