BIOINFORMATICS TOOLS

Gene Prediction

  • GENEID – A program to predict genes, exons, splice sites and other signals along a DNA sequence.
  • AUGUSTUS – Program that predicts genes in eukaryotic genomic sequences.
  • EuGene – Integrative gene finder for eukaryotic and prokaryotic genomes.
  • PseudoPipe – A stand alone computational pipeline for pseudogene annotation.
  • GenScan – Web server for the identification of complete gene structures in genomic DNA.
  • HMMgene – 1.1 – Program for prediction of vertebrate and C. elegans genes.

Must Read

Illustration of Google DeepMind's AlphaProtein Novo (AP Novo) designing custom de novo enzymes using AI to solve pharmaceutical and environmental degradation challenges.

Google DeepMind Introduces AlphaProtein Novo: How AI Is Designing Enzymes from Scratch

Anchal Negi - 0
A team of researchers from Google DeepMind (London and Mountain View), the California Institute of Technology (Pasadena), and the University of Pittsburgh has just...
MGH and Broad researchers map 9,814 poison exons and link 1,625 pathogenic variants to brain disorders. Published in Genome Biology.

9,814 Poison Exons Mapped: A Hidden Splicing Switch Behind Brain Disorders

Dr. Tamanna Anwar - 0
MGH and Broad researchers map 9,814 poison exons and link 1,625 pathogenic variants to brain disorders. Published in Genome Biology.
Text prompt turning into a 3D protein structure, illustrating AI protein design from plain English.

Prompteina: Designing Proteins From Plain-English Descriptions

Dr. Tamanna Anwar - 0
Researchers at the University of Washington, the Allen Institute for AI (Ai2), the National University of Singapore, and the Howard Hughes Medical Institute have...
Blue AI-designed protein structures in a row, with a frosted glass panel revealing a hidden dotted watermark pattern across one protein.

SynthID Bio: Google DeepMind Brings Invisible Watermarks to AI-Designed Proteins

Dr. Tamanna Anwar - 0
Google DeepMind's SynthID Bio, published in Nature, hides watermarks in AI-designed proteins while preserving binding. How it works and its limits.
TurbOmics

TurbOmics: A Free, No-Code Web Platform That Puts Metabolomics at the Center of Multi-Omics...

Dr. Tamanna Anwar - 0
TurbOmics, a free web platform from CNIC and EMBL, integrates metabolomics with proteomics and transcriptomics data, no coding needed.