Tuesday, January 21, 2025

BIOINFORMATICS TOOLS

Gene Prediction

  • GENEID – A program to predict genes, exons, splice sites and other signals along a DNA sequence.
  • AUGUSTUS – Program that predicts genes in eukaryotic genomic sequences.
  • EuGene – Integrative gene finder for eukaryotic and prokaryotic genomes.
  • PseudoPipe – A stand alone computational pipeline for pseudogene annotation.
  • GenScan – Web server for the identification of complete gene structures in genomic DNA.
  • HMMgene – 1.1 – Program for prediction of vertebrate and C. elegans genes.

Must Read

Penn Researchers Use Deep Learning to Design Multimodal Antibiotics for Combating Intracellular Infections

Penn Researchers Use Deep Learning to Design Multimodal Antibiotics for Combating Intracellular Infections

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The rise of antimicrobial resistance has made treating intracellular infections a significant challenge, as conventional antibiotics often fail to neutralize pathogens hidden within human...
Quantum-Si Unveils ProteoVue™ to Unlock New Frontiers in Protein Variant Detection with Next-Generation Protein Sequencing

Quantum-Si Unveils ProteoVue™ to Unlock New Frontiers in Protein Variant Detection with Next-Generation Protein...

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Single-molecule Next-Generation Protein Sequencing (NGPS) provides a powerful alternative to mass spectrometry for analyzing protein variants, allowing detailed identification of proteoforms and amino acid...
Revolutionizing Drug Discovery: MOLRL Combines Reinforcement Learning and Generative Models for Targeted Molecular Generation

Revolutionizing Drug Discovery: MOLRL Combines Reinforcement Learning and Generative Models for Targeted Molecular Generation

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Cellarity, Inc., and NVIDIA have unveiled MOLRL (Molecule Optimization with Latent Reinforcement Learning), a groundbreaking framework for molecular optimization. This approach leverages the latent...
25 New Compounds: How Scripps Research Uses Computer Modeling to Transform Drug Discovery

25 New Compounds: How Scripps Research Uses Computer Modeling to Transform Drug Discovery

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In an extraordinary feat of chemical synthesis, chemists from Scripps Research have produced 25 picrotoxane molecules. This groundbreaking work combines cutting-edge computational modeling and...
How Evolla is Deciphering the Molecular Language of Proteins with an 80 Billion Parameter Generative Model

How Evolla is Deciphering the Molecular Language of Proteins with an 80 Billion Parameter...

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The complex molecular machinery that make up nature, proteins have evolved over billions of years and are essential to the continuation of life. However,...