Bioinformatics
Bioinformatics Software, Resources, and Libraries A curated list of awesome Bioinformatics software, resources, and libraries for Data Processing, Next Generation Sequencing Data Analysis and much more. Mostly command line based, and free or open-source.
Collection of tools and resources for bioinformatics, genomics, agriculture, food science, medicine, genetic engineering, etc.
Genome wide Event finding and Motif discovery. High resolution peak calling and motif discovery for ChIP-seq and ChIP-exo data.
Must Read
FedPyDESeq2: Advancing Differential Expression Analysis with Federated Learning for Bulk RNA-Seq
In genomics, the conventional approach for explaining any gene expression is to cross-analyze bulk RNA sequencing (RNA-seq) data. However, as researchers, more often than...
Decoding Protein Roles with ProCyon: A Unified Framework for Multiscale Phenotypes
About 20% of human proteins lack recognized functionalities, and over 40% lack context-specific functionals, underscoring the difficulties of comprehending these proteins and their varied...
Streamlining Copy Number Variation Discovery: How CNV-Finder is Changing Genomics
A prevailing challenge in genomics still revolves around the comprehension of structural variants, one of which is copy number variation (CNV). To undertake the...
Unlocking Protein Design with PLAID: A Sequence-Centric Generative Model for All-Atom Structures
The potential influence of generative models for protein design is drawing the attention of the scientific world. However, there are numerous modalities that mediate...
The Nucleotide Transformer: How Foundation Models are Shaping Human Genomics
The field of genomics is ever-changing as a result of an increase in automation and aspects of biological engineering. A groundbreaking study led by...