Sequencing

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Expansion in situ Genome Sequencing: A New Tool for Studying Nuclear Abnormalities
ByAnchal Negi October 1, 2024October 22, 2026

The investigation of nuclear anomalies and how they influence the regulation of genes warrants analysis of various cellular functions and diseases. The researchers from MIT, Harvard, and the University of California San Francisco describe a new approach, Expansion in situ Genome Sequencing (ExIGS), that allows, for the first time, to unravel the relationship between nuclear…

Read More Expansion in situ Genome Sequencing: A New Tool for Studying Nuclear Abnormalities
Bioinformatics | Gene Expression | Genomics | News | Paper Summary | Sequencing | Trending

Did Aquatic Algae Pave the Way for Lush Forests? New Research Suggests Yes!
ByAnchal Negi May 8, 2024October 22, 2026

Have you ever wondered how those dense jungles and tall trees appear? It began with a leap from the water, a colonization attempt by our plant forebears more than 550 million years ago. But how could these marine organisms have acquired the necessary adaptations for living in such an arid environment? — A recent publication…

Read More Did Aquatic Algae Pave the Way for Lush Forests? New Research Suggests Yes!
Bioinformatics | Infectious Diseases | Metagenomics | News | Paper Summary | Sequencing | Trending

Mount Sinai Researchers Introduce mEnrich-seq: A New Approach to Enriching Taxa of Interest in Microbiomes
ByDeotima Chakraborty January 8, 2024January 8, 2024

In this study, researchers at Icahn School of Medicine developed mEnrich-seq, a method that can enrich taxa of interest from metagenomic DNA before sequencing. This is introduced as existing technologies could only sequence the desired bacterial taxa (pathogens, beneficial microorganisms, or low-abundance taxa), and not the large background of other taxa in a microbiome sample…

Read More Mount Sinai Researchers Introduce mEnrich-seq: A New Approach to Enriching Taxa of Interest in Microbiomes
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Breaking Barriers in Genomic Research: DRAGEN Delivers Accurate Variant Detection in 30 Minutes
ByAnchal Negi January 7, 2024January 7, 2024

Scientists took decades to decode the complex code of DNA, and though we have come a long way, the journey is far from over. The development of DRAGEN sheds light on new unknown secrets, unlocking a deeper understanding of our bodies and nature around us. Illumina has always provided us with the best tools and resources, acting…

Read More Breaking Barriers in Genomic Research: DRAGEN Delivers Accurate Variant Detection in 30 Minutes
Bioinformatics | Database | Genomics | News | NGS | Sequencing | Trending

The UK Biobank Released the Largest Set of Whole Genome Sequences Together with Population Genetics and Trait Association Studies for 150,119 Individuals
ByTanveen Kaur July 26, 2022November 11, 2022

Scientists discuss the study of 150,119 people’s whole genomes from the UK Biobank, which is a group of high-quality variants that includes 58,707,036 indels and 585,040,410 single-nucleotide polymorphisms, or 7.0 percent of all potential single-nucleotide polymorphisms in humans. A thorough and trustworthy characterization of both sequences and phenotypic variation is necessary to gain a thorough…

Read More The UK Biobank Released the Largest Set of Whole Genome Sequences Together with Population Genetics and Trait Association Studies for 150,119 Individuals
Bioinformatics | Corona Virus | COVID-19 | Covid-19 News | Genomics | News | NGS | Paper Summary | Sequencing | Trending

Scientists Devised a Bioinformatics Method ‘COJAC’ for Early Detection and Surveillance of SARS-CoV-2 Genomic Variants in Wastewater
ByTanveen Kaur July 21, 2022November 11, 2022

Using read pairs with several SARS-CoV-2 variant-specific signature mutations as a reliable signal of low-frequency variants, scientists develop the bioinformatics technique known as COJAC (Co-Occurrence adjusted Analysis and Calling). The genomic sequencing, in conjunction with COJAC, can offer population-level estimates of the prevalence and fitness of emerging variants from wastewater samples earlier and on the basis…

Read More Scientists Devised a Bioinformatics Method ‘COJAC’ for Early Detection and Surveillance of SARS-CoV-2 Genomic Variants in Wastewater
Bioinformatics | News | NGS | RNA-Seq | Sequencing | Transcriptomics | Trending

Single Cell RNA Sequencing Determines 16 Distinct Cell Populations in a Key Brain Area for Substance Use Disorders
ByDr. Tamanna Anwar April 21, 2022November 25, 2023

The University of Alabama in Birmingham researchers have found 16 unique cell populations in a complex part of the midbrain known as the ventral tegmental area, or VTA, using single-cell RNA sequencing in a study that advances the field. Expanding our understanding of the VTA’s function will help us better understand the mechanisms behind substance…

Read More Single Cell RNA Sequencing Determines 16 Distinct Cell Populations in a Key Brain Area for Substance Use Disorders
Bioinformatics | Biotech | Data Science | Featured | Genomics | News | NGS | Paper Summary | Precision Medicine | Trending

Scientists Revealed the First Complete, Gapless Human Genome Sequence ‘T2T-CHM13’
ByDr. Tamanna Anwar April 6, 2022June 18, 2022

An international group of scientists has finally published the whole human genome sequence. The new reference genome fills in gaps left by previous versions, allowing researchers to understand better genetic variation and how it can contribute to disease in specific cases. The complete human genome sequence has already provided new perspectives to genome biology and…

Read More Scientists Revealed the First Complete, Gapless Human Genome Sequence ‘T2T-CHM13’
AI | Bioinformatics | Genomics | Health | News | NGS | Trending

Fastest DNA Sequencing that Uses AI and Accelerated Computing Sets Guinness World Record For Completing DNA Sequencing in Just Five Hours and Two Minutes
ByDr. Tamanna Anwar February 27, 2022June 18, 2022

Stanford University researchers established the record in collaboration with NVIDIA, Oxford Nanopore Technologies, Google, Baylor College of Medicine, and the University of California, Santa Cruz. This week, Guinness World Records awarded a Stanford University-led research team the first record for quickest DNA sequencing technology — a benchmark established utilizing a workflow enhanced by AI and…

Read More Fastest DNA Sequencing that Uses AI and Accelerated Computing Sets Guinness World Record For Completing DNA Sequencing in Just Five Hours and Two Minutes
Bioinformatics | Cancer Research | Genomics | Metagenomics | News | OMICS | Sequencing | Trending

A New Sequencing Technique Developed for Low-Biomass, Degraded, or Contaminated Microbiome Samples
ByDr. Tamanna Anwar January 28, 2022September 8, 2022

A low-cost metagenome sequencing technology has been developed by scientists from the Chinese Academy of Sciences’ Qingdao Institute of Bioenergy and Bioprocess Technology (QIBEBT). It allows high-resolution disclosure of a microbiome’s whole ‘landscape’ of species, even from low-biomass, damaged, or polluted samples. The ‘microbiome‘ is referred to a community of microorganisms (bacteria, fungi, protists, and…

Read More A New Sequencing Technique Developed for Low-Biomass, Degraded, or Contaminated Microbiome Samples

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