Training Genomics & NGS

WGS Data Analysis: from reads to variants

A two-week live program covering the complete whole genome sequencing pipeline, from raw reads to variant calling and functional interpretation, using command-line, industry-standard Linux tools.

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  • 2 weeksMon–Fri, live online
  • 1 houra day, evening IST
  • 4 modulesCommand-line tools

Next cohort

Dates to be announced

  • Duration2 weeks
  • ScheduleMon–Fri · 1 hour a day
  • ModeLive online (Google Meet)
  • Also offered asWGS + GWAS 1-month internship
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Curriculum

The full WGS pipeline, on the command line

Four modules that follow a real whole genome analysis, run with the same Linux tools used in research and industry.

LinuxFastQCBWABowtie2GATKFreeBayesMantaCNVkitVEPANNOVAR

01

Linux basics and NGS file formats

Working on the command line, and the FASTQ, BAM and VCF formats you will use throughout. Tool: Linux shell.

02

Quality control, preprocessing and alignment

Check read quality, clean the data and align reads to a reference genome. Tools: FastQC, BWA, Bowtie2.

03

Variant calling

Call SNVs, indels, structural variants (SVs) and copy-number variants (CNVs). Tools: GATK, FreeBayes, Manta, CNVkit.

04

Functional annotation and interpretation

Annotate variants and interpret their biological impact. Tools: VEP, ANNOVAR.

Who should apply

Eligibility

  • Students in B.Sc., B.Tech., M.Sc., M.Tech. or PhD programs in life sciences or computer science
  • Postdocs and research scholars
  • Teaching and industry professionals

What’s included

Program benefits

  • Live, instructor-led sessions
  • Recordings of every session
  • Workshop materials
  • Certificate
  • Online technical support after the workshop

Fees

Course fees

One fee covers all live sessions, recordings, materials and the certificate. Payment and registration open when the next cohort is announced.

Also offered as a 1-month WGS + GWAS internship package (from ₹3,500 / USD 70 for students).

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CategoryIndia (INR)International (USD)
Students (up to Master’s)₹2,250USD 40
PhD scholars₹2,500USD 45
Postdocs / research scholars₹2,750USD 50
Staff / faculty₹3,000USD 55
Industry professionals₹3,500USD 60
Fees for the next cohort. USD fees apply to anyone living, working or studying outside India.

Teaching team

Course instructors

SMDr. Shikha MittalBioinformatics Trainer, CBIRT

TADr. Tamanna AnwarFounder, CBIRT

Format

How the course runs

  • DatesTo be announced
  • SessionsMon–Fri, 1 hour a day (last cohort: 7:15–8:15 PM IST)
  • PlatformGoogle Meet (live)
  • Missed a session?Recordings provided

FAQ

Course questions

When does the next cohort start?

Dates are not announced yet. Click Notify me or message us on WhatsApp, and we’ll tell you when enrollment opens.

Do I need prior experience?

A basic understanding of bioinformatics and genomics is expected. Linux basics are covered in the first module.

What will I need on my computer?

A computer running Windows 10/11, macOS or Linux, with a reliable internet connection. Google Meet runs in your web browser.

What if I miss a live session?

Every session is recorded, and you get access to the recordings.

Will I get a certificate?

Yes. The certificate is awarded on completing the course assignment.

Interested in WGS Data Analysis?

Get notified when the next cohort opens, or ask us about prerequisites and fees.

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