Training Genomics & NGS
Genome Assembly: from reads to reference
A hands-on live program on genome assembly and annotation: the complete workflow from raw sequencing reads to an annotated genome, using industry-standard tools.
- 2 weeksMon–Fri, live online
- 1 houra day, evening IST
- 7 modulesAssembly to annotation
Next cohort
Dates to be announced
- Duration2 weeks
- ScheduleMon–Fri · 1 hour a day
- ModeLive online (Google Meet)
Curriculum
The complete genome assembly workflow
Seven modules from raw reads to genome annotation, run on Linux.
LinuxFastQCTrimmomaticSPAdesCanuQUASTBUSCO
01
Introduction to genome assembly
Assembly concepts and the FASTA, FASTQ and SAM/BAM formats.
02
Read quality assessment and preprocessing
Check and clean raw reads. Tools: FastQC, Trimmomatic.
03
Assembly algorithms and concepts
How assemblers work and how to choose an approach.
04
Short-read de novo assembly
Assemble a genome from short reads. Tool: SPAdes.
05
Long-read de novo assembly
Assemble a genome from long reads. Tool: Canu.
06
Assembly quality assessment
Evaluate assembly quality and completeness. Tools: QUAST, BUSCO.
07
Genome annotation
Annotate the assembled genome.
Who should apply
Eligibility
- Students in B.Sc., B.Tech., M.Sc., M.Tech. or PhD programs in life sciences or computer science
- Postdocs and research scholars
- Teaching and industry professionals
What’s included
Program benefits
- Live, instructor-led sessions
- Recordings of every session
- Workshop materials
- Certificate
- Online technical support after the workshop
Fees
Course fees
One fee covers all live sessions, recordings, materials and the certificate. Payment and registration open when the next cohort is announced.
| Category | India (INR) | International (USD) |
|---|---|---|
| Students (up to Master’s) | ₹2,250 | USD 40 |
| PhD scholars | ₹2,500 | USD 45 |
| Postdocs / research scholars | ₹2,750 | USD 50 |
| Staff / faculty | ₹3,000 | USD 55 |
| Industry professionals | ₹3,500 | USD 60 |
Teaching team
Course instructors
SMDr. Shikha MittalBioinformatics Trainer, CBIRT
TADr. Tamanna AnwarFounder, CBIRT
Format
How the course runs
- DatesTo be announced
- SessionsMon–Fri, 1 hour a day (last cohort: 7:00–8:00 PM IST)
- PlatformGoogle Meet (live)
- Missed a session?Recordings provided
FAQ
Course questions
When does the next cohort start?
Dates are not announced yet. Click Notify me or message us on WhatsApp, and we’ll tell you when enrollment opens.
Do I need prior experience?
A basic understanding of bioinformatics and genomics is expected. Linux basics will help, as the tools run on the command line.
What will I need on my computer?
A computer running Linux, or Linux installed virtually (for example in a virtual machine), with a reliable internet connection.
What if I miss a live session?
Every session is recorded, and you get access to the recordings.
Will I get a certificate?
Yes. The certificate is awarded on completing the course assignment.
Interested in Genome Assembly?
Get notified when the next cohort opens, or ask us about prerequisites and fees.