AlphaFold Database

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Navigating the AlphaFold Universe with DPCstruct’s Domain-Level Classification
ByNeermita Bhattacharya August 30, 2024October 22, 2026

AlphaFold is a database of protein structures and predictions. It contains predictions for ~214 million proteins. AlphaFold2, developed by DeepMind, has dramatically scaled our capability to predict protein structures in silico. The extent of this data is overwhelming, and there are challenges regarding protein annotation, which practically applies to the information. Hence, researchers from the…

Read More Navigating the AlphaFold Universe with DPCstruct’s Domain-Level Classification
AI | Bioinformatics | Database | Drug Discovery | News | Paper Summary | Structural Biology | Trending

BioNeMo Folds the Human Proteome: A Fused Dataset of 3D Protein Models for Machine Learning Applications
ByAnchal Negi June 13, 2024October 22, 2026

In a recent scientific breakthrough, a team of researchers from NVIDIA and Innophore, USA, came up with a holistic dataset of the predicted protein folding for each member of the proteome of human beings (the complete set of molecules encoded by human genes), representing a great advancement in protein science. Introduction Life has protein as…

Read More BioNeMo Folds the Human Proteome: A Fused Dataset of 3D Protein Models for Machine Learning Applications
AI | Bioinformatics | News | Paper Summary | Structural Biology | Trending

Massive Structural Clustering of the AlphaFold Database using Foldseek Cluster Reveals New Insights into Protein Structure and Evolution
ByPrachi Khare October 7, 2023October 8, 2023

Hundreds of millions of protein structures can be clustered using the new AI algorithm “Foldseek Cluster,” which was developed by a team of researchers from EMBL-EBI, the Institute of Molecular Systems Biology at ETH Zurich, and Seoul National University. Researchers used Foldseek Cluster for clustering the entire AlphaFold database, identifying 2.3 million non-singleton structural clusters,…

Read More Massive Structural Clustering of the AlphaFold Database using Foldseek Cluster Reveals New Insights into Protein Structure and Evolution

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