{"id":2789,"date":"2022-01-02T19:12:32","date_gmt":"2022-01-02T13:42:32","guid":{"rendered":"https:\/\/cbirt.net\/staging\/?p=2789"},"modified":"2022-06-18T13:41:06","modified_gmt":"2022-06-18T08:11:06","slug":"spiralize-r-package-to-visualize-data-on-spirals","status":"publish","type":"post","link":"https:\/\/cbirt.net\/staging\/spiralize-r-package-to-visualize-data-on-spirals\/","title":{"rendered":"spiralize: R package to visualize data on spirals"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\">For data visualization, the spiral arrangement offers two significant advantages. Firstly, data with long axes can be visualized, enhancing visualization resolution. Secondly, time-series data may be used to reveal recurring patterns.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">spiralize is an R package that offers a generic solution for displaying data on spirals. It has many graphics functions that allow users to construct self-defined high-level graphics quickly.<\/p>\n\n\n\n<figure class=\"wp-block-image\"><img decoding=\"async\" src=\"https:\/\/lh3.googleusercontent.com\/l24eqSf2uqV07ymJxRioYTDOFBJ3QGbu9Ncxr1P7xMFKiIpE93Wu2tKHGlGADye3gkhi61f8DaZFOuml1aX6QbyAiNb7XpD9B8dzaU-3R6tVv9XUTgtfYa8L70FWYXMctJxrBsiC\" alt=\"\"\/><figcaption>Examples of <em>spiralize<\/em> visualizations. (<strong>A<\/strong>) Daily downloads of the <em>ggplot2<\/em> package. (<strong>B<\/strong>) 91 subtypes of central nervous system tumors from 2801 samples. (<strong>C<\/strong>) DNA methylation and four histone modification signals along the gene <em>BCAT2<\/em>. (<strong>D<\/strong>) Phylogenetic tree of 3738 mammals. Unit on the <em>y<\/em>-axis: million years ago (mya). (<strong>E<\/strong>) Pairwise alignment of CDS of the gene <em>TP53<\/em> between human and its mouse homologue.<br>Source: <a href=\"https:\/\/doi.org\/10.1093\/bioinformatics\/btab778\">https:\/\/doi.org\/10.1093\/bioinformatics\/btab778<\/a><\/figcaption><\/figure>\n\n\n\n<p class=\"wp-block-paragraph\"><em>spiralize <\/em>can be used for visualizing subtype classification, phylogenetic tree, pairwise alignment, etc.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">The package <em>spiralize<\/em>&nbsp; and its documentation are available freely at the Comprehensive R Archive Network (CRAN) <a href=\"https:\/\/cran.r-project.org\/package=spiralize\">https:\/\/CRAN.R-project.org\/package=spiralize<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Source: <a href=\"https:\/\/doi.org\/10.1093\/bioinformatics\/btab778\">https:\/\/doi.org\/10.1093\/bioinformatics\/btab778<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>For data visualization, the spiral arrangement offers two significant advantages. Firstly, data with long axes can be visualized, enhancing visualization resolution. Secondly, time-series data may be used to reveal recurring patterns. spiralize is an R package that offers a generic solution for displaying data on spirals. It has many graphics functions that allow users to&#8230;<\/p>\n","protected":false},"author":3,"featured_media":2790,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_kad_post_transparent":"","_kad_post_title":"","_kad_post_layout":"","_kad_post_sidebar_id":"","_kad_post_content_style":"","_kad_post_vertical_padding":"","_kad_post_feature":"","_kad_post_feature_position":"","_kad_post_header":false,"_kad_post_footer":false,"_kad_post_classname":"","footnotes":""},"categories":[154,142,155,134],"tags":[161,162],"class_list":["post-2789","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-bioinformatics","category-covid-19-news","category-data-science","category-trending","tag-r-package","tag-spiralize"],"yoast_head":"<!-- This site is optimized with the Yoast SEO Premium plugin v28.7 (Yoast SEO v28.7) - https:\/\/yoast.com\/product\/yoast-seo-premium-wordpress\/ -->\n<title>spiralize: R package to visualize data on spirals - CBIRT<\/title>\n<meta name=\"description\" content=\"spiralize is an R package that offers a generic solution for displaying data on spirals. 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